For Ecommerce Brands

Bookkeeping built for Shopify and marketplace sellers

Payout reconciliation for Shopify and marketplace platforms. Handle fees, refunds, and chargebacks automatically.

Why ecommerce books break

Marketplace platforms make selling easy—but reconciling net payouts to gross revenue is where most bookkeepers struggle.

Net payouts ≠ Gross revenue

Marketplace platforms deposit net amounts after fees, returns, and adjustments. Your bank shows $8,500 but you sold $10,000 worth of product.

Example: $10k in sales becomes an $8.5k deposit after platform fees, shipping, and returns. The $1.5k gap needs reconciliation.

Refunds hit different periods

Refunds and chargebacks happen weeks or months after the original sale, creating cross-period revenue adjustments that break the close.

Example: A December sale gets refunded in January. Now December revenue needs adjustment and January shows a negative transaction.

Multi-channel sales scattered

Sales across Shopify and other channels land in different systems. Bookkeepers manually consolidate, introducing errors and delays.

Example: Shopify shows $50k, your other channel shows $30k, but your P&L shows $75k. Where's the $5k discrepancy?

Inventory & COGS disconnected

Sold units don't automatically update inventory or trigger COGS entries. Bookkeepers track inventory in spreadsheets, creating reconciliation chaos.

Example: You sold 500 units but COGS only shows 450. Inventory is off by 50 units and gross margin is wrong.

How we handle payout reconciliation

Gross sales recognized when orders ship

Revenue posted at gross amount—not net of platform fees.

Platform fees expensed separately

Platform fees reconciled and categorized as operating expenses.

Payouts reconcile to bank

Net payout amount matches your bank deposit—no mystery gaps.

Ecommerce platform integrations

We connect directly to your sales channels, payment processors, and accounting software.

Shopify

Sales, payouts, refunds, and inventory sync

Stripe

Transaction-level data and fee reconciliation

QuickBooks Online

General ledger sync and reconciliation

Don't see your platform? We integrate with most ecommerce and payment systems. Contact us to confirm compatibility.

Inventory & COGS: What we handle

We provide limited support for inventory and COGS. If your business has complex manufacturing or significant physical inventory, we may not be the best fit.

What We Handle

  • •Basic COGS tracking (avg cost method)
  • •Simple inventory reconciliation
  • •Purchase and sales cost matching

What's NOT Included

  • Ă—SKU-level inventory tracking
  • Ă—Manufacturing cost allocation
  • Ă—Multi-location warehouse tracking

Refunds & chargebacks handled automatically

Refunds and chargebacks are reconciled when they hit the platform and offset against the original revenue period.

Refunds

Refunds are matched to the original sale and offset against the original revenue period, not the refund date.

Example: December sale refunded in January → December revenue adjusted down

Chargebacks

Chargebacks are reconciled when notified by the platform, with fees expensed separately from the revenue reversal.

Example: $100 sale reversed + $15 chargeback fee → Both tracked separately

Period Adjustments

Cross-period adjustments are logged and explained in your monthly close package, with full audit trail.

Example: Prior period adjustment report shows all December changes made in January

Controls + observability included

Same controls as all Omniga customers: review thresholds, locked periods, exception logs, and in-app observability.

Review Thresholds

High-risk transactions flagged automatically for human review before posting.

Locked Periods

Prior months locked after close. No silent changes to historical financials.

In-App Observability

See what changed, why it changed, and who changed it—directly in the platform.

Exception Logs

Every escalation, override, and manual adjustment logged with context.

See the complete workflow and controls in action

FAQ

Built for ecommerce founders

Payout reconciliation finally makes sense. No more manual tracking of fees and refunds across platforms.

David C.David C.Ecommerce CFO · $3M revenue

Multi-channel sales are consolidated automatically. We finally have clean financials without the spreadsheet chaos.

Rachel L.Rachel L.Founder · D2C Brand

Multi-Channel Visibility

Consolidated financials across Shopify and direct sales—all reconciled to your GL.

SOC 2 Compliant

Security controls, audit trails, and compliance documentation for scaling ecommerce businesses.

Ready for bookkeeping that understands ecommerce?

Payout reconciliation, platform fees, and refund handling—delivered by the 10th business day.